TARGET Data Matrix

Version 3.0 (March 2012) Version History

Disease

Patient
Data

Gene
Expression

Copy
Number

Epigenetics

miRNA

Sequence

Acute
Lympho-
blastic
Leukemia
(ALL)
Phase I

Clinical
File

Case
Matrix

Affymetrix U133 Plus 2
L1 L2	L3 L4

Affymetrix SNP 500K
L1 L2	L3 L4

Whole Genome
View cases
L1 L2	L3 L4

Whole Genome Lite
View cases
L1 L2	L3 L4

RNA-Seq
L1 L2	L3 L4

Targeted Re- sequencing
Sequence Trace Linking Table 125 Genes

Kinome
Kinome Linking Table 113 genes

Acute
Lympho-
blastic
Leukemia
(ALL)
Phase II

Clinical
File

Case
Matrix

Affymetrix U133 Plus 2
L1 L2	L3 L4

Affymetrix SNP 6.0
L1 L2	L3 L4

HELP Methylation
L1 L2	L3 L4

Whole Genome
L1 L2	L3 L4

Exome
L1 L2	L3 L4

RNA-Seq
L1 L2	L3 L4

Acute
Myeloid
Leukemia
(AML)

Clinical
File

Case
Matrix

Affymetrix Gene ST
L1 L2	L3 L4

Affymetrix SNP 6.0
L1 L2	L3 L4

Illumina Infinium 27K
L1 L2	L3 L4

miRNA- Seq
L1 L2	L3 L4

Whole Genome
L1 L2	L3 L4

Exome
L1 L2	L3 L4

RNA-Seq
L1 L2	L3 L4

High-Risk
Wilms
Tumor

Clinical
File

Case
Matrix

Affymetrix U133 Plus 2
L1 L2	L3 L4

Affymetrix SNP 6.0
L1 L2	L3 L4

Illumina Infinium 27K
L1 L2	L3 L4

Whole Genome
L1 L2	L3 L4

Exome
L1 L2	L3 L4

RNA-Seq
L1 L2	L3 L4

Neuro-
blastoma
(NBL)
Phase I*
Phase II†

Clinical
File

Case
Matrix

Affymetrix HumanExon 1.0 ST v2*
L1 L2	L3 L4

Illumina 550K SNP*
L1 L2	L3 L4

Illumina Infinium 27K†
L1 L2	L3 L4

Whole Genome*
L1 L2	L3 L4
Whole Genome†
L1 L2	L3 L4

Exome*
L1 L2	L3 L4

Targeted Re- sequencing*
Sequence Trace Linking Table 116 genes

RNA-Seq*
L1 L2	L3 L4

Osteo-
sarcoma
(OS)

Clinical
File

Case
Matrix

Affymetrix HumanExon 1.0 ST
L1 L2	L3 L4

Affymetrix SNP 6.0
L1 L2	L3 L4

Illumina Infinium 450K
L1 L2	L3 L4

MegaPlex TaqMan

Whole Genome
L1 L2	L3 L4

Exome
L1 L2	L3 L4

RNA-Seq
L1 L2	L3 L4

TARGET Data Legend
Blue: Public Red: Protected Black: Unavailable For NBL Only Purple*: Phase I Data Orange†: Phase II Data	Level 1 (L1) = Raw/Trace Data Level 2 (L2) = Processed/Normalized Data Level 3 (L3) = Aggregated Data Level 4 (L4) = Cumulative Data