National Cancer Institute at the National Institutes of Health (www.cancer.gov)

TARGET Data Matrix

Version 4.1 (January 2015) Version History
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TARGET Banner
Disease Patient
Data
Gene
Expression
Copy
Number
Methylation miRNA Sequence Other
Acute Lymphoblastic Leukemia (ALL)
Acute
Lympho-
blastic
Leukemia
(ALL)
Phase I
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2
DCC Open*
Affymetrix
SNP 500K

DCC Open*
DCC Controlled†














Whole
Genome
FASTQ/BAM† DCC Controlled†
Whole
Genome Lite
FASTQ/BAM†

mRNA-seq

FASTQ/BAM†
DCC Open*
DCC Controlled†

Targeted Re-
sequencing

Kinome

Acute
Lympho-
blastic
Leukemia
(ALL)
Phase II
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2
Affymetrix
SNP 6.0
NimbleGen
HELP
miRNA-seq

FASTQ/BAM†

Whole
Genome
FASTQ/BAM†

Whole
Exome

FASTQ/BAM†

mRNA-seq

FASTQ/BAM†













Acute Myeloid Leukemia (AML)
Acute
Myeloid
Leukemia
(AML)
Clinical
File


Case
Matrix
Affymetrix
Gene ST
Affymetrix
SNP 6.0
Illumina
Infinium 27K
miRNA-seq

FASTQ/BAM†

Whole
Genome
FASTQ/BAM†

Whole
Exome
FASTQ/BAM†

mRNA-seq

FASTQ/BAM†













Acute
Myeloid
Leukemia
Induction
Failure (AML-IF)
Clinical
File


Case
Matrix
mRNA-seq

FASTQ/BAM†

Whole
Genome
FASTQ/BAM†







miRNA-seq

FASTQ/BAM†

Whole
Genome
FASTQ/BAM†







mRNA-seq

FASTQ/BAM†













Kidney Tumors
High-Risk
Wilms
Tumor (WT)
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2

Affymetrix
SNP 6.0

Illumina
Infinium 450K

miRNA-seq

FASTQ/BAM†

Whole
Genome

FASTQ/BAM†

Whole
Exome

FASTQ/BAM†

mRNA-seq

FASTQ/BAM†













Clear Cell
Sarcoma
of the Kidney
(CCSK)
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2

Affymetrix
SNP 6.0

Illumina
Infinium 450K







Whole
Genome

FASTQ/BAM†







mRNA-seq

FASTQ/BAM†













Rabdoid
Tumor
(RT)
Clinical
File


Case
Matrix
mRNA-seq

FASTQ/BAM†

Whole
Genome

FASTQ/BAM†

Bisulfite-seq

FASTQ/BAM†

miRNA-seq

FASTQ/BAM†

Whole
Genome

FASTQ/BAM†







mRNA-seq

FASTQ/BAM†



ChIP-seq

FASTQ/BAM†

Neuroblastoma (NBL)
Neuro-
blastoma
(NBL)
Clinical
File


Case
Matrix
Affymetrix
HumanExon
1.0 ST v2
DCC Controlled†
Illumina
550K SNP


DCC Controlled†
Illumina
Infinium
450K






Whole
Genome


FASTQ/BAM†

Whole
Exome


FASTQ/BAM†

mRNA-seq


FASTQ/BAM†

Targeted Re-
sequencing










Osteosarcoma (OS)
Osteo-
sarcoma
(OS)
Clinical
File


Case
Matrix
Affymetrix
HumanExon
1.0 ST
Affymetrix
SNP 6.0


Illumina
Infinium
450K

MegaPlex
TaqMan






Whole
Genome


FASTQ/BAM†

Whole
Exome


FASTQ/BAM†

mRNA-seq
















TARGET Data Legend
Blue: Public*
Red: Protected†
Black: Unavailable
All DCC Controlled† access links require an NCI account
All FASTQ/BAM† are controlled access links and require an eRA Commons account